3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09133

Details:

PFam ID : PF09133

PFam Domain Description : SANTA (SANT Associated)

Number of Sequence in 50% Dataset : 24

Number of Sequence in Full Dataset : 49

Average sequence length: 91.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09133	A9V4M1_MONBE_200_305	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09133	E2A0W1_9HYME_917_1011	100

Sequence based PCA Plot of the family - PF09133 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=57 Length=8
Motif3 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay