3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10685

Details:

PFam ID : PF10685

PFam Domain Description : Stress-induced bacterial acidophilic repeat motif

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 251

Average sequence length: 21.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10685	E3RIB1_PYRTT_60_75	8.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10685	A7HD37_ANADF_234_256	61

Sequence based PCA Plot of the family - PF10685 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay