3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03534

Details:

PFam ID : PF03534

PFam Domain Description : Salmonella virulence plasmid 65kDa B protein

Number of Sequence in 50% Dataset : 92

Number of Sequence in Full Dataset : 163

Average sequence length: 213.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03534	A6E637_9RHOB_37_232	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03534	B3EU05_AMOA5_50_364	100

Sequence based PCA Plot of the family - PF03534 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=149 Length=8
Motif3 Start=242 Length=8
Motif4 Start=211 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay