3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12127

Details:

PFam ID : PF12127

PFam Domain Description : SigmaW regulon antibacterial

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 136

Average sequence length: 301.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12127	E6LGI7_9ENTE_1_74	70

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12127	E3YVR3_LISIN_1_94	100

Sequence based PCA Plot of the family - PF12127 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=77 Length=8
Motif3 Start=4 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay