3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04856

Details:

PFam ID : PF04856

PFam Domain Description : Securin sister-chromatid separation inhibitor

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 34

Average sequence length: 195

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04856	B0QZU1_MOUSE_1_97	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04856	B0QZU1_MOUSE_1_97	54

Sequence based PCA Plot of the family - PF04856 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay