3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06821

Details:

PFam ID : PF06821

PFam Domain Description : Serine hydrolase

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 386

Average sequence length: 168.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06821	D0WN15_9ACTO_27_223	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06821	D0WN15_9ACTO_27_223	100

Sequence based PCA Plot of the family - PF06821 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=52 Length=8
Motif3 Start=6 Length=11
Motif4 Start=81 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay