3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03088

Details:

PFam ID : PF03088

PFam Domain Description : Strictosidine synthase

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 279

Average sequence length: 85.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03088	F1LF89_ASCSU_1_38	75.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03088	C5XZP4_SORBI_46_95	100

Sequence based PCA Plot of the family - PF03088 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=9 Length=8
Motif2 Start=65 Length=8
Motif3 Start=47 Length=8
Motif4 Start=91 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay