3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06687

Details:

PFam ID : PF06687

PFam Domain Description : SUR7/PalI family

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 347

Average sequence length: 221.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06687	A4RG57_MAGO7_9_332	99.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF06687	B0CTR0_LACBS_15_93	97.1

Sequence based PCA Plot of the family - PF06687 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=162 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay