3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02090

Details:

PFam ID : PF02090

PFam Domain Description : Salmonella surface presentation of antigen gene type M protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 8

Average sequence length: 121.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02090	D0MTV2_PHYIT_95_210	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02090	Q57351_SALCH_1_147	100

Sequence based PCA Plot of the family - PF02090 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay