3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05635

Details:

PFam ID : PF05635

PFam Domain Description : S23 ribosomal protein

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 606

Average sequence length: 103.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05635	B9FY96_ORYSJ_270_374	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05635	D7W4P1_9FLAO_5_116	100

Sequence based PCA Plot of the family - PF05635 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=57 Length=8
Motif3 Start=97 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay