3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03435

Details:

PFam ID : PF03435

PFam Domain Description : Saccharopine dehydrogenase

Number of Sequence in 50% Dataset : 313

Number of Sequence in Full Dataset : 1377

Average sequence length: 300.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03435	E5Z0C1_9BACL_4_345	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03435	A6GEP1_9DELT_1_272	99.4

Sequence based PCA Plot of the family - PF03435 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=140 Length=8
Motif2 Start=99 Length=11
Motif3 Start=187 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay