3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01922

Details:

PFam ID : PF01922

PFam Domain Description : SRP19 protein

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 249

Average sequence length: 92.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01922	C4V8B4_NOSCE_8_141	90.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01922	C4V8B4_NOSCE_8_141	100

Sequence based PCA Plot of the family - PF01922 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=20
Motif2 Start=48 Length=8
Motif3 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay