3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01033

Details:

PFam ID : PF01033

PFam Domain Description : Somatomedin B domain

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 257

Average sequence length: 45.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01033	A8Q6Z8_BRUMA_193_226	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01033	Q5C236_SCHJA_41_110	100

Sequence based PCA Plot of the family - PF01033 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=10 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay