3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF06468 Details: PFam ID : PF06468 PFam Domain Description : Spondin_N Number of Sequence in 50% Dataset : 46 Number of Sequence in Full Dataset : 156 Average sequence length: 158.5 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF06468E4MTC7_CAPOC_260_38277.7 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF06468C4QPR4_SCHMA_321_518100 Sequence based PCA Plot of the family - PF06468 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 2 motifsMotif1 Start=1 Length=8Motif2 Start=12 Length=21 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF06468
PFam Domain Description : Spondin_N
Number of Sequence in 50% Dataset : 46
Number of Sequence in Full Dataset : 156
Average sequence length: 158.5
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER