3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12726

Details:

PFam ID : PF12726

PFam Domain Description : SEN1 N terminal

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 75

Average sequence length: 598.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12726	Q55J08_CRYNE_127_946	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12726	C9SBC1_VERA1_87_861	100

Sequence based PCA Plot of the family - PF12726 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=18 Length=8
Motif3 Start=9 Length=8
Motif4 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay