3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03145

Details:

PFam ID : PF03145

PFam Domain Description : Seven in absentia protein family

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 222

Average sequence length: 150.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03145	D6WCR8_TRICA_280_427	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03145	D7MSX7_ARALL_10_161	100

Sequence based PCA Plot of the family - PF03145 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay