3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01699

Details:

PFam ID : PF01699

PFam Domain Description : Sodium/calcium exchanger protein

Number of Sequence in 50% Dataset : 433

Number of Sequence in Full Dataset : 3688

Average sequence length: 136.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01699	D2VKX1_NAEGR_13_177	60.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01699	B6HKC2_PENCW_9_201	99.7

Sequence based PCA Plot of the family - PF01699 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=60 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay