3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08450

Details:

PFam ID : PF08450

PFam Domain Description : SMP-30/Gluconolaconase/LRE-like region

Number of Sequence in 50% Dataset : 506

Number of Sequence in Full Dataset : 1487

Average sequence length: 228.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08450	Q1K1I5_DESAC_65_272	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08450	C9Z9M2_STRSW_221_304	100

Sequence based PCA Plot of the family - PF08450 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=132 Length=8
Motif3 Start=9 Length=8
Motif4 Start=117 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay