3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00464

Details:

PFam ID : PF00464

PFam Domain Description : Serine hydroxymethyltransferase

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 1501

Average sequence length: 349.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00464	D6TKT7_9CHLR_3_404	59.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00464	E9E6U3_METAQ_1_281	100

Sequence based PCA Plot of the family - PF00464 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=246 Length=17
Motif2 Start=84 Length=46
Motif3 Start=151 Length=38

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay