3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12138

Details:

PFam ID : PF12138

PFam Domain Description : Spherulation-specific family 4

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 143

Average sequence length: 225.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12138	F0Y0A6_9STRA_24_297	95.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12138	D6M5H1_9ACTO_9_143	100

Sequence based PCA Plot of the family - PF12138 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay