3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04293

Details:

PFam ID : PF04293

PFam Domain Description : SpoVR like protein

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 276

Average sequence length: 371.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04293	C9RBH8_AMMDK_1_168	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04293	C6AR37_TERTT_1_241	99.6

Sequence based PCA Plot of the family - PF04293 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=169 Length=8
Motif3 Start=67 Length=8
Motif4 Start=120 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay