3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07228

Details:

PFam ID : PF07228

PFam Domain Description : Stage II sporulation protein E (SpoIIE)

Number of Sequence in 50% Dataset : 1061

Number of Sequence in Full Dataset : 3297

Average sequence length: 191.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07228	D9V135_9ACTO_2_80	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07228	F0V9H6_NEOCA_200_490	100

Sequence based PCA Plot of the family - PF07228 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=138 Length=8
Motif3 Start=88 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay