3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09551

Details:

PFam ID : PF09551

PFam Domain Description : Stage II sporulation protein R (spore_II_R)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 139

Average sequence length: 128.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09551	A9KKE8_CLOPH_67_198	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09551	A9KKE8_CLOPH_67_198	100

Sequence based PCA Plot of the family - PF09551 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=84 Length=8
Motif2 Start=7 Length=24
Motif3 Start=113 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay