3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08177

Details:

PFam ID : PF08177

PFam Domain Description : Small acid-soluble spore protein N family

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 18

Average sequence length: 43.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08177	F2UMK0_9EUKA_664_848	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08177	C3HLW6_BACTU_1_44	100

Sequence based PCA Plot of the family - PF08177 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=1 Length=8
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay