3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08141

Details:

PFam ID : PF08141

PFam Domain Description : Small acid-soluble spore protein H family

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 76

Average sequence length: 56.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08141	C0Z6N5_BREBN_1_58	7.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08141	C0Z6N5_BREBN_1_58	100

Sequence based PCA Plot of the family - PF08141 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=20 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay