3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00835

Details:

PFam ID : PF00835

PFam Domain Description : SNAP-25 family

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 58

Average sequence length: 56.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00835	B3RKY3_TRIAD_97_157	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00835	Q5R499_PONAB_91_135	82

Sequence based PCA Plot of the family - PF00835 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay