3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10369

Details:

PFam ID : PF10369

PFam Domain Description : Small subunit of acetolactate synthase

Number of Sequence in 50% Dataset : 42

Number of Sequence in Full Dataset : 937

Average sequence length: 74.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10369	F2D8T3_HORVD_1_38	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10369	D7GPX4_9FIRM_90_166	100

Sequence based PCA Plot of the family - PF10369 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=27 Length=8
Motif3 Start=62 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay