3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01052

Details:

PFam ID : PF01052

PFam Domain Description : Surface presentation of antigens (SPOA)

Number of Sequence in 50% Dataset : 258

Number of Sequence in Full Dataset : 1222

Average sequence length: 75.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01052	Q0C5L0_HYPNA_158_238	18.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01052	Q0C5L0_HYPNA_158_238	100

Sequence based PCA Plot of the family - PF01052 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=49 Length=8
Motif3 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay