3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04925

Details:

PFam ID : PF04925

PFam Domain Description : SHQ1 protein

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 97

Average sequence length: 175.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04925	A2FQ70_TRIVA_96_264	81.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04925	D8LCQ4_ECTSI_774_977	100

Sequence based PCA Plot of the family - PF04925 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=32 Length=8
Motif3 Start=81 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay