3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02031

Details:

PFam ID : PF02031

PFam Domain Description : Streptomyces extracellular neutral proteinase (M7) family

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 54

Average sequence length: 127.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02031	C4Z7I8_EUBE2_177_282	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02031	A3TQ61_9MICO_85_214	100

Sequence based PCA Plot of the family - PF02031 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=92 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay