3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12771

Details:

PFam ID : PF12771

PFam Domain Description : Starch-binding associating with outer membrane

Number of Sequence in 50% Dataset : 191

Number of Sequence in Full Dataset : 312

Average sequence length: 426.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12771	D7VH06_9SPHI_1_568	98.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12771	C6W0L5_DYAFD_1_185	100

Sequence based PCA Plot of the family - PF12771 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=535 Length=8
Motif2 Start=233 Length=11
Motif3 Start=163 Length=8
Motif4 Start=511 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay