3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05123

Details:

PFam ID : PF05123

PFam Domain Description : S-layer like family, N-terminal region

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 41

Average sequence length: 258.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05123	D5VT12_METIM_6_386	59.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05123	Q5JI58_PYRKO_4_325	100

Sequence based PCA Plot of the family - PF05123 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=155 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay