3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04935

Details:

PFam ID : PF04935

PFam Domain Description : Surfeit locus protein 6

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 148

Average sequence length: 203.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04935	E1FME1_LOALO_1_53	16.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04935	E1FME1_LOALO_1_53	100

Sequence based PCA Plot of the family - PF04935 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=187 Length=8
Motif3 Start=150 Length=8
Motif4 Start=141 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay