3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02290

Details:

PFam ID : PF02290

PFam Domain Description : Signal recognition particle 14kD protein

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 127

Average sequence length: 94.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02290	E5SK58_TRISP_4_117	18.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02290	C0SH90_PARBP_7_85	100

Sequence based PCA Plot of the family - PF02290 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=18 Length=8
Motif2 Start=2 Length=8
Motif3 Start=59 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay