3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10069

Details:

PFam ID : PF10069

PFam Domain Description : Sensory domain found in DIguanylate Cyclases & Two-component systems

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 108

Average sequence length: 125.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10069	D4YNQ9_9MICO_245_369	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10069	E8MYY6_ANATU_26_148	100

Sequence based PCA Plot of the family - PF10069 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=75 Length=8
Motif3 Start=62 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay