3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF12105

Details:

PFam ID : PF12105

PFam Domain Description : SpoU, rRNA methylase, C-terminal

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 144

Average sequence length: 56.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12105	A6DCQ6_9PROT_165_200	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF12105	E4PHU1_MARAH_163_220	100

Sequence based PCA Plot of the family - PF12105 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=18
Motif2 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay