3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02630

Details:

PFam ID : PF02630

PFam Domain Description : SCO1/SenC

Number of Sequence in 50% Dataset : 262

Number of Sequence in Full Dataset : 1261

Average sequence length: 164.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02630	Q21YA3_RHOFD_1_94	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02630	A6CKU6_9BACI_4_90	100

Sequence based PCA Plot of the family - PF02630 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=42 Length=8
Motif2 Start=175 Length=14
Motif3 Start=103 Length=11
Motif4 Start=63 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay