3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04545

Details:

PFam ID : PF04545

PFam Domain Description : Sigma-70, region 4

Number of Sequence in 50% Dataset : 266

Number of Sequence in Full Dataset : 3473

Average sequence length: 50.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04545	A2TIV0_9ALPH_74_268	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04545	A6X7G3_OCHA4_281_330	99.9

Sequence based PCA Plot of the family - PF04545 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=43 Length=8
Motif2 Start=26 Length=8
Motif3 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay