3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF09547

Details:

PFam ID : PF09547

PFam Domain Description : Stage IV sporulation protein A (spore_IV_A)

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 129

Average sequence length: 453.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09547	C0BBF3_9FIRM_1_307	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF09547	C0BBF3_9FIRM_1_307	100

Sequence based PCA Plot of the family - PF09547 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=379 Length=20
Motif2 Start=115 Length=8
Motif3 Start=233 Length=8
Motif4 Start=363 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay