3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01758

Details:

PFam ID : PF01758

PFam Domain Description : Sodium Bile acid symporter family

Number of Sequence in 50% Dataset : 208

Number of Sequence in Full Dataset : 1535

Average sequence length: 183.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01758	A5B393_VITVI_494_562	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01758	Q8ZSA9_NOSS1_37_111	100

Sequence based PCA Plot of the family - PF01758 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=30 Length=8
Motif4 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay