3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11601

Details:

PFam ID : PF11601

PFam Domain Description : Shal-type voltage-gated potassium channels

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 18

Average sequence length: 27.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11601	D3EHE3_GEOS4_1_244	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11601	C5J8X3_SCHMA_2_28	94.1

Sequence based PCA Plot of the family - PF11601 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay