3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF11969

Details:

PFam ID : PF11969

PFam Domain Description : Scavenger mRNA decapping enzyme C-term binding

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 523

Average sequence length: 112.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11969	A5DUB3_LODEL_127_205	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF11969	D0MQF1_PHYIT_17_108	100

Sequence based PCA Plot of the family - PF11969 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=135 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay