3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF02667

Details:

PFam ID : PF02667

PFam Domain Description : Short chain fatty acid transporter

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 170

Average sequence length: 398.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02667	D4YNE9_9MICO_1_138	84.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF02667	A6GIQ1_9DELT_4_475	99.4

Sequence based PCA Plot of the family - PF02667 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=302 Length=22
Motif2 Start=128 Length=8
Motif3 Start=428 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay