3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF04102

Details:

PFam ID : PF04102

PFam Domain Description : SlyX

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 351

Average sequence length: 67.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04102	E1V925_HALED_16_88	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF04102	E1V925_HALED_16_88	100

Sequence based PCA Plot of the family - PF04102 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=9 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay