3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01887

Details:

PFam ID : PF01887

PFam Domain Description : S-adenosyl-l-methionine hydroxide adenosyltransferase

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 348

Average sequence length: 248.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01887	B4V0F3_9ACTO_222_330	93.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01887	Q30XU7_DESDG_3_326	100

Sequence based PCA Plot of the family - PF01887 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=133 Length=8
Motif3 Start=84 Length=8
Motif4 Start=42 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay