3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF05546

Details:

PFam ID : PF05546

PFam Domain Description : She9 / Mdm33 family

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 68

Average sequence length: 182.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05546	C0NP51_AJECG_200_267	52.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF05546	A8PT08_MALGO_7_214	100

Sequence based PCA Plot of the family - PF05546 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=8
Motif2 Start=123 Length=8
Motif3 Start=10 Length=8
Motif4 Start=112 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay