3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07557

Details:

PFam ID : PF07557

PFam Domain Description : Shugoshin C terminus

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 90

Average sequence length: 25.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07557	E7NT32_TREPH_1_81	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07557	E1BVX2_CHICK_160_184	100

Sequence based PCA Plot of the family - PF07557 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay