3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07516

Details:

PFam ID : PF07516

PFam Domain Description : SecA Wing and Scaffold domain

Number of Sequence in 50% Dataset : 192

Number of Sequence in Full Dataset : 1336

Average sequence length: 206.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07516	D0LXH0_HALO1_643_974	98.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07516	D1ZWT9_SORMK_1_98	100

Sequence based PCA Plot of the family - PF07516 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=66 Length=8
Motif2 Start=1 Length=8
Motif3 Start=90 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay