3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01017

Details:

PFam ID : PF01017

PFam Domain Description : STAT protein, all-alpha domain

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 115

Average sequence length: 164.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01017	B4NFX0_DROWI_173_336	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01017	B3DLJ2_XENTR_137_313	99.1

Sequence based PCA Plot of the family - PF01017 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=115 Length=8
Motif4 Start=136 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay