3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF10496

Details:

PFam ID : PF10496

PFam Domain Description : SNARE-complex protein Syntaxin-18 N-terminus

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 109

Average sequence length: 81.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10496	B0CY30_LACBS_4_89	29.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF10496	D5G5I8_TUBMM_2_80	100

Sequence based PCA Plot of the family - PF10496 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay